E. coli K-12 MG1655 resequencing, microbial smoke-test (paper 1.6)
phalaena:study:PA-DS-ecoli-k12-mg1655
This slot uses an early Illumina deposit of the canonical Escherichia coli K-12 MG1655 reference strain (SRA run SRR001665, study SRP000220), aligned against the complete genome U00096.3. There is no single landmark paper bound to the read deposit itself; the strain and its reference sequence are the object. As an optional methods reference for K-12 MG1655 resequencing we carry Conrad TM, Lewis NE, Palsson BØ et al. Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome Biol. 2009;10(10):R118. doi:10.1186/gb-2009-10-10-r118. pmid:19888208.
- kind
- study
- organism
- Escherichia coli str. K-12 substr. MG1655
- assay
- Illumina short-read WGS, paired-end
- status
- reviewed
- pubmed:19888208
- insdc.sra:SRR001665
- biosample:SAMN00000749
- bioproject:PRJNA30551
- ncbitaxon:511145
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