DLPFC section 151673, 10x Visium adult human prefrontal cortex (paper 5.1)
phalaena:sample:PA-S-5-1-DLPFC-151673
One DLPFC tissue section (sample 151673) from the spatialLIBD adult human dorsolateral prefrontal cortex study, sequenced as a 10x Visium spatial library. The full study covers 12 sections from 3 donors; we mirror a single section as the canonical human-tissue input for the spatial-transcriptomics pipeline. The pipeline runs this sample in intake_qc mode (Space Ranger is blocked on commercial licensing), which checks the read-QC and spot-barcode-profile path rather than a full clustering analysis. No run has processed this section yet: the Wave 2 run filed under it processed Sequence Read Archive run SRR10903401, a bronchoalveolar-lavage metatranscriptome from another study, because the download script fetched that run into this sample's folder (see the run record). For layer-level biology the section carries the expected cortical-layer markers (SNAP25 neuronal, MOBP white matter), but those are upstream literature priors, not Phalaena-computed outputs on the intake_qc path.
- kind
- sample
- organism
- Homo sapiens
- assay
- Visium Spatial Gene Expression, 10x_visium_spatial
- tissue
- dorsolateral prefrontal cortex
- status
- reviewed
- ncbitaxon:9606
- bioconductor:spatialLIBD
- pubmed:33558695
- doi:10.1038/s41593-020-00787-0
View DLPFC section 151673, 10x Visium adult human prefrontal cortex (paper 5.1) on the Phalaena Wiki