Resting human PBMC, 10x Chromium 3' v3.1 (paper 4.2)
phalaena:sample:PA-S-4-2-pbmc-ctrl
Resting (unstimulated) human PBMC lane from a healthy donor, 10x Chromium 3' v3.1 chemistry (Erbon 2023). The control arm of the resting-versus-LPS contrast. v3.1 reads ship as native paired _1.fastq.gz (28 bp R1 = barcode + UMI) plus _2.fastq.gz (90 bp R2 = cDNA), so no BAM round-trip is needed; the pipeline consumes the pre-paired R1/R2 layout directly through STARsolo. This sample is the baseline against which the LPS-4h sample's TLR4-NF-kappa-B program is read.
- kind
- sample
- organism
- Homo sapiens
- assay
- single_cell_rna_seq
- tissue
- peripheral blood
- cell_type
- peripheral blood mononuclear cell
- status
- reviewed
- insdc.sra:SRR23692466
- geo:GSM7077865
- bioproject:PRJNA940428
- ncbitaxon:9606
View Resting human PBMC, 10x Chromium 3' v3.1 (paper 4.2) on the Phalaena Wiki