E. coli K-12 MG1655, Illumina Genome Analyzer PE36 (paper 1.6)
phalaena:sample:PA-S-1-6-ecoli-k12-mg1655
Escherichia coli K-12 MG1655 (the canonical bacterial reference strain), one early Illumina Genome Analyzer paired-end whole-genome deposit. 20.8 million paired reads before fastp (about 10.4 million spots on the SRA run SRR001665, 36 bp per read), aligned to the complete MG1655 genome U00096.3. We use this sample as the first microbial verification input for the genomics short-read pipeline: at 4.6 Mb it is the smallest, fastest end-to-end exercise of every stage, and because the strain is resequenced against its own reference genome the variant count is a near-null sanity check rather than a discovery target.
- kind
- sample
- organism
- Escherichia coli str. K-12 substr. MG1655
- status
- reviewed
- insdc.sra:SRR001665
- biosample:SAMN00000749
- bioproject:PRJNA30551
- ncbitaxon:511145
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