Metabolomics, P. aeruginosa / S. aureus co-culture (USA300), Wave 3 (2026-06-11)
phalaena:run:PA-R-7-4-wave3-2026-06-11
Wave 3 gap-fill run of paper 7.4 (P. aeruginosa / S. aureus co-culture metabolome, four positive-mode USA300_pos mzML files from MetaboLights MTBLS2105). End-to-end through the untargeted metabolomics feature-finding chain (MZML_STATS → PEAK_PICKER → FEATURE_FINDER_METABO → FEATURE_MATRIX), SUCCESS at 21:18:20Z on 2026-06-09 (run id 432f92a3), 9 min wall clock. This is the first microbial metabolome in the corpus: a bacterial culture extract rather than a human biofluid or a plant extract. The pipeline reported 36,400 features across the four samples and 35,891 unique (m/z, RT) keys in the merged feature matrix, at a mean of 9,100 features per sample. The four USA300_pos mzML are pre-converted at the source, so the optional RAW_TO_MZML ThermoRawFileParser stage is skipped.
- kind
- run
- pipeline
- Untargeted metabolomics pipeline, release p1.1
- status
- reviewed
- phalaena:run:432f92a3
- metabolights:MTBLS2105
View Metabolomics, P. aeruginosa / S. aureus co-culture (USA300), Wave 3 (2026-06-11) on the Phalaena Wiki