Proteomics, E. coli K-12 quantitative proteome, Wave 3 run (2026-06-11)
phalaena:run:PA-R-6-4-wave3-2026-06-11
Wave 3 gap-fill run of paper 6.4 (Schmidt 2016, the quantitative and condition-dependent E. coli K-12 proteome). Two LC-MS runs end-to-end through the OpenMS plus Comet shotgun chain: mzML stats, reversed-decoy database, peak picking, Comet search, FDR filter at 1 percent, PSM export, plots, summary. SUCCESS at 22:19:30Z on 2026-06-09, 19.0 min wall clock (run id 7a2c03f0). This is the first prokaryote proteomics slot in the corpus. The run reported 57,983 PSMs, 29,391 unique peptides, and 4,143 unique target proteins aggregated across the two samples, the protein count sitting just below the size of the E. coli K-12 reference proteome.
- kind
- run
- pipeline
- Proteomics pipeline, release p1.1
- status
- draft
- phalaena:run:7a2c03f0
- pride.project:PXD000498
View Proteomics, E. coli K-12 quantitative proteome, Wave 3 run (2026-06-11) on the Phalaena Wiki