Proteomics, MaxLFQ HeLa + E. coli, Wave 2 run (2026-05-06)
phalaena:run:PA-R-6-1-wave2-2026-05-06
Wave 2 proteomics run of paper 6.1 (Cox 2014 MaxLFQ HeLa + E. coli benchmark, three OFFGEL fractions). End-to-end through the OpenMS plus Comet shotgun chain: mzML stats, reversed-decoy database, peak picking, Comet search, FDR filter at 1 percent, PSM export, plots, summary. SUCCESS in 35 minutes wall clock. The run id is 9c5f078f4d356f170a430c6824acae7f (orchestrator ledger). Numeric outputs match the per-sample and run-wide PSM, peptide, and protein-group headlines pinned in MANIFEST.json to the digit.
- kind
- run
- pipeline
- Proteomics pipeline, release p1.1
- status
- draft
- googlebatch:9c5f078f4d356f170a430c6824acae7f
- phalaena:run:9c5f078f
- pride.project:PXD000279
View Proteomics, MaxLFQ HeLa + E. coli, Wave 2 run (2026-05-06) on the Phalaena Wiki