Proteomics, MaxLFQ HeLa + E. coli, Wave 2 run (2026-05-06)
phalaena:run:PA-R-6-1-wave2-2026-05-06
Wave 2 proteomics run of paper 6.1 (Cox 2014 MaxLFQ HeLa + E. coli benchmark, three OFFGEL fractions). End-to-end through the OpenMS plus Comet shotgun chain: mzML stats, reversed-decoy database, peak picking, Comet search, an FDR filter step set to 1 percent that did not filter (OpenMS 3.5.0 rejects the option the pipeline passes it), PSM export, plots, summary. SUCCESS in 35 minutes wall clock. The run id is 9c5f078f4d356f170a430c6824acae7f (orchestrator ledger). Numeric outputs match the per-sample and run-wide PSM, peptide, and protein-group headlines pinned in MANIFEST.json to the digit.
- kind
- run
- pipeline
- Proteomics pipeline, release p1.1
- status
- draft
- googlebatch:9c5f078f4d356f170a430c6824acae7f
- phalaena:run:9c5f078f
- pride.project:PXD000279
View Proteomics, MaxLFQ HeLa + E. coli, Wave 2 run (2026-05-06) on the Phalaena Wiki