Spatial transcriptomics, mouse colon DSS day0 + day14, Wave 3 intake_qc (2026-06-11)
phalaena:run:PA-R-5-5-wave3-2026-06-11
Wave 3 gap-fill run of paper 5.5 (Parigi 2022, healing mouse colon after DSS injury) through the spatial-transcriptomics pipeline in intake_qc mode. SUCCESS at 05:03:00Z on 2026-06-10 (orchestrator run id a4ada592), 4.8 minutes wall clock per the recovered-metrics table. The run takes one day-0 section (SRR14083626_day0) and one day-14 section (SRR14083627_day14), each head-subset to the first 35,000,000 read pairs, and reports 2 samples and 69,526,054 total reads after QC. This validates the QC-intake path on a two-timepoint colon injury-and-recovery experiment.
- kind
- run
- pipeline
- Spatial transcriptomics pipeline, release p1.1
- status
- reviewed
- phalaena:run:a4ada592
- geo:GSE169749
View Spatial transcriptomics, mouse colon DSS day0 + day14, Wave 3 intake_qc (2026-06-11) on the Phalaena Wiki