Genomics long-read, P. aeruginosa PAO1 ONT R10.4.1, Wave 3 (2026-06-11)
phalaena:run:PA-R-2-5-wave3-2026-06-11
Wave 3 run of paper 2.5 (P. aeruginosa PAO1, ONT GridION R10.4.1 Dorado, 339,997 reads). End-to-end through the long-read pipeline's ONT branch (NanoPlot read QC, minimap2 map-ont alignment, samtools sort and flagstat, bcftools mpileup/call), completing in 1 h 38 min wall clock with SUCCESS. The run mapped against the strain-matched RefSeq PAO1 assembly GCF_000006765. Headline figures read directly from summary.json: 339,997 reads, 85.94 percent primary-mapped rate, 87 bcftools variants (34 SNP, 53 indel). Run id b77f7195e088808dcc42003f986c2bfd.
- kind
- run
- pipeline
- Genomics long-read pipeline, release p1.1
- status
- reviewed
View Genomics long-read, P. aeruginosa PAO1 ONT R10.4.1, Wave 3 (2026-06-11) on the Phalaena Wiki