Genomics long-read, E. coli CFT073 ONT R10.4, Wave 3 (2026-06-11)
phalaena:run:PA-R-2-4-wave3-2026-06-11
Wave 3 run of paper 2.4 (E. coli CFT073, ONT GridION R10.4 SUP, 268,362 reads). End-to-end through the long-read pipeline's ONT branch (NanoPlot read QC, minimap2 map-ont alignment, samtools sort and flagstat, bcftools mpileup/call), completing in 37 minutes wall clock with SUCCESS. The run mapped against the strain-matched RefSeq CFT073 assembly GCF_000007445.1. Headline figures read directly from summary.json: 268,362 reads, 99.61 percent primary-mapped rate, 844 bcftools variants (545 SNP, 299 indel). Run id b719f1e6882eff99033cf25f0dfc9a83.
- kind
- run
- pipeline
- Genomics long-read pipeline, release p1.1
- status
- reviewed
View Genomics long-read, E. coli CFT073 ONT R10.4, Wave 3 (2026-06-11) on the Phalaena Wiki