Genomics short-read, NA12878 1KGP 30x, Wave 2 GPU run (2026-05-09)
phalaena:run:PA-R-1-3-wave2-2026-05-09
Wave 2 GPU run of paper 1.3 (1000 Genomes NA12878 30x re-sequencing, single NovaSeq PE150 run subset). End-to-end through the Parabricks GPU branch, completing in 2 h 46 min wall clock. SUCCESS at 21:45Z on 2026-05-09. The validation snapshot records this as a "lucky pass on Spot L4 (no preemption on 29-min FQ2BAM + 28-min HaplotypeCaller)." The run re-validates GATK retry idempotency, the BWA-MEM1 index patch, the snpsift container fix, and the g2-standard-16 host-RAM bump that resolved the PARABRICKS_FQ2BAM OOM on the larger 30x input (validation finding #24).
- kind
- run
- pipeline
- Genomics short-read pipeline, release p1.1
- status
- reviewed
- googlebatch:ad4dd59480bf5c1712ad30171cdb91b7
- phalaena:run:ad4dd594
View Genomics short-read, NA12878 1KGP 30x, Wave 2 GPU run (2026-05-09) on the Phalaena Wiki