Genomics short-read, NA12878 Platinum Genomes, Wave 2 GPU re-queue (2026-05-09)
phalaena:run:PA-R-1-2-wave2-2026-05-09
Wave 2 GPU re-queue of paper 1.2 (Platinum Genomes NA12878, single-run Illumina HiSeq 2000 PE100 subset). End-to-end through the Parabricks GPU branch with non-GPU stages on Spot, completing in 6 h 1 min wall clock (6h 1m 30s exact, per the validation snapshot). SUCCESS at 07:04:13Z on 2026-05-09, all 15 tasks SUCCEEDED through SUMMARY. This is the slot that validated the CLINVAR_ANNOTATE snpsift container fix (validation finding #23) and, jointly with the 1.1 run, the BWA-MEM1 patch (finding #1). The summary reports 38,795,286 mapped reads at 100.0 % mapping, 111,022 variants, and 1,190 ClinVar-benign annotations populated.
- kind
- run
- pipeline
- Genomics short-read pipeline, release p1.1
- status
- reviewed
- googlebatch:229ecd59...
- phalaena:run:229ecd59
View Genomics short-read, NA12878 Platinum Genomes, Wave 2 GPU re-queue (2026-05-09) on the Phalaena Wiki