GIAB HG002 shortread parity gate (Wave 1 baseline vs Wave 2, eight tolerance gates)

Name: GIAB HG002 shortread parity gate (Wave 1 baseline vs Wave 2, eight tolerance gates)
License: https://creativecommons.org/licenses/by/4.0/

phalaena:analysis:PA-A-hg002-cpu-gpu-parity

Does the genomics_shortread CPU code path reproduce the Wave 1 baseline exactly on the eight PLAN.md §6 tolerance gates when re-run in Wave 2, and is the Parabricks GPU code path parity-validated end to end against that CPU result?

kind: analysis
status: reviewed

pubmed:27271295
doi:10.1038/nbt.3519
insdc.sra:SRR1766443

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